dotfiles 🍩

Personal dotfiles, managed in three layers:

• Nix (nix/) — system configuration and packages, pinned by flake.lock and applied with a rebuild. Fully reproducible.
• Stow (stow/) — dotfiles symlinked into $HOME with GNU Stow. Changes take effect immediately, no rebuild needed.
• Package tools — CLI tools installed by their own package managers (currently uv for Python, deno for npm). Nix declares which tools and installs missing ones on rebuild, but versions are unpinned and upgraded manually.

Quickstart

Nix

Note

• This requires having Nix installed. See the Nix README.
• The flake.nix is designed to set up the machine based on its hostname.

# Rebuild system + packages + dotfiles (reproducible, uses flake.lock)
sudo darwin-rebuild switch --flake ~/.dotfiles#"$(hostname -s)"  # macOS
sudo nixos-rebuild switch --flake ~/.dotfiles#"$(hostname -s)"   # NixOS

# Update ALL flake inputs, then rebuild
nix flake update

# Update only the unstable-pinned inputs, then rebuild
nix flake update nixpkgs-unstable nix-darwin home-manager-unstable llm-agents dotfiles

# Clean up old Nix generations, keeping the last 5 days for rollback safety
sudo nix-collect-garbage --delete-older-than 5d

Note

On macOS, home-manager's per-user activation can silently fail to apply (a known upstream launchctl asuser flakiness). The rebuild self-heals this: a guard in nix/shared/system/darwin.nix verifies the activation landed and retries it, failing loudly otherwise. See CLAUDE.md for manual verification and recovery.

Stow

Dotfiles are managed with GNU Stow, not Nix.

Note

The darwin-rebuild and nixos-rebuild commands will run stow as well.

• Edit files in stow/ directory and run stow
• Changes are immediately active (no rebuild needed)

# Apply dotfiles (no Nix rebuild needed)
cd ~/.dotfiles/stow
stow --target="$HOME" --restow --no-folding --adopt shared "$(uname -s)"

--adopt absorbs any real file that has replaced a managed symlink into the repo instead of aborting; review the result with git diff before committing.

Shell

The shell entrypoint is stow/shared/.zshrc, which sources stow/shared/.zshrc_user. The user file loads the shell configuration chain:

1. shell/exports.sh — PATH (including shell/bin/ utils), globals, env vars
2. shell/aliases.sh — shell aliases
3. shell/sourcing.sh — tool initialization, plugins, completions

See Project config for details on shell initialization, direnv, and per-project tooling.

Package tools

Note

I'm not happy with how this is designed, see dotfiles#202.

CLI tools that come from language ecosystems rather than nixpkgs are declared in Nix (see nix/shared/home/package-tools.nix) but installed by their native package manager. A rebuild installs anything missing; upgrades are manual:

uv tool upgrade --all   # Python tools (uv)
npm-tools-upgrade       # npm tools (deno)

LLM agent CLIs (claude-code, opencode,...) are the exception: they are plain Nix packages from the llm-agents flake input, upgraded via nix flake update llm-agents + rebuild.

Other READMEs and references

• Neovim ⌨️
  • My Neovim config - uses vim.pack
  • Minimalistic config
• Workflows 🌊
  • Git config
  • Project config
• Fonts
  • Berkeley Mono ❤️
  • Maple Mono
  • Noto Color Emoji
  • Symbols Nerd Font Mono
• Host-specific documentation
  • rpi5-homelab - requires custom installation procedure